Entry Detail


General Information

Database ID: LDA0001569
Species: Homo sapiens
Confidence Score: 1
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Yes

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:MALAT1
Full Name:metastasis associated lung adenocarcinoma transcript 1
Category:LncRNA
Species:Homo sapiens
Synonyms:HCN|LINC00047|NCRNA00047|NEAT2|PRO2853
Chromosome:11
Strand:+
Coordinate:
Start Site(bp):65497738End Site(bp):65506516
External Links:
Ensembl ID:ENSG00000251562
Ensembl Transcript ID:N/A
Entrez Gene:378938.0
NONCODE ID:N/A
RefSeq Accession:NR_002819.4

 

ncRNA Association Statistics

Total Associated Disease Number:204   
More Information
Causal Disease Number:132
Network:
Top Causal Diseases:
Breast Neoplasms  (Score: 1)
Breast Neoplasms  (Score: 1)
Coronary Artery Disease  (Score: 1)
Stomach Neoplasms  (Score: 1)
Colorectal Neoplasms  (Score: 1)
tongue squamous cell carcinoma  (Score: 1)
Colorectal Neoplasms  (Score: 1)
Stomach Neoplasms  (Score: 1)
Carcinoma, Non-Small-Cell Lung  (Score: 1)
Carcinoma, Renal Cell  (Score: 1)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:3347D012516
Disease Name:osteosarcomaOsteosarcoma
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A bone sarcoma that is located_in bone that has_material_basis_in cells of mesenchymal origin.A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)
Alias:Osteogenic sarcoma//Skeletal sarcoma//bone tissue neoplasm//osteoid sarcomaOsteosarcoma//Osteosarcomas//Osteosarcoma Tumor//Osteosarcoma Tumors//Tumor, Osteosarcoma//Tumors, Osteosarcoma//Sarcoma, Osteogenic//Osteogenic Sarcomas//Sarcomas, Osteogenic//Osteogenic Sarcoma

 

Disease Association Statistics

Total Associated ncRNA Number:656   
More Information
Causal ncRNA Number:600
Network:
Top Causal ncRNAs:
NEAT1  (Score: 1)
PVT1  (Score: 1)
GAS5  (Score: 1)
SNHG16  (Score: 1)
LINC00662  (Score: 1)
MALAT1  (Score: 1)
MALAT1  (Score: 1)
LINC00662  (Score: 1)
ZFAS1  (Score: 1)
TUG1  (Score: 1)
More Information

 

Evidence Support

Strong Evidence:RNA Pull-Down//Western Blot//Wound Healing Assay//CCK8//qRT-PCR//RIP//MTT//Luciferase Report Assay//Cell Apoptosis Assay//ELISA//Colony Formation Assay//Transwell Assay
Weak Evidence:

 

Reference

[1] PubMed ID:30481748
Disease Name:Osteosarcoma
Sample:osteosarcoma tissues
Dysfunction Pattern:Regulation[PI3K-Akt Signaling Pathway]
Validated Method:Wound Healing Assay//CCK8//qRT-PCR//Colony Formation Assay//Transwell Assay
Description:MALAT1 was significantly up-regulated in osteosarcoma tissues compared with adjacent non-tumor soft tissues. Our data revealed for the first time that MALAT1 increases stem cell-like properties by up-regulating RET via sponging miR-129-5p, and thus activates the PI3K-Akt signaling pathway and provides potential therapeutic targets for osteosarcoma treatment.
Causality:Yes
Causal Description:Overexpression of MALAT1 promoted osteosarcoma cell proliferation, migration, and invasion in vitro and enhanced tumor growth in a tumor xenograft mouse model.
Clinical-realted Application:

[2] PubMed ID:30365098
Disease Name:Osteosarcoma
Sample:OS tissues and cell lines
Dysfunction Pattern:Regulation[miR‑34a/cyclin D1 axis]
Validated Method:qRT-PCR//RIP//MTT//Luciferase Report Assay//Transwell Assay
Description:The results demonstrated that MALAT1 and CCND1 mRNA expression levels were upregulated and miR‑34a was downregulated in OS tissues and cells. Moreover, MALAT1 functioned as a ceRNA to suppress miR‑34a expression and in turn upregulate CCND1 in OS cells. Rescue experiments further demonstrated that MALAT1 knockdown partially reversed anti‑miR‑34a‑mediated promotion on OS cell viability, migration and invasion; overexpression of CCND1 partially reversed the effects of MALAT1 silencing on OS progression. Furthermore, in vivo experiments also revealed that MALAT1 promoted OS tumor growth via miR‑34a inhibition and upregulating the expression of CCND1. In conclusion, the present study suggested that MALAT1 exerted its oncogenic function in OS by regulating the miR‑34a/CCND1 axis in OS, which may provide novel insight into the diagnosis and therapy for OS.
Causality:Yes
Causal Description:In addition, MALAT1 promoted OS cell viability, invasion and migration, while MALAT1 silencing exhibited opposing effects.
Clinical-realted Application:Additionally, MALAT1 expression was correlated with tumor size, clinical stage and distant metastasis in patients with OS.

[3] PubMed ID:30793707
Disease Name:Osteosarcoma
Sample:osteosarcoma tissues and cell lines
Dysfunction Pattern:Interaction[binding to miR-34a/c-5p and miR-449a/b]
Validated Method:Western Blot//Wound Healing Assay//CCK8//qRT-PCR//Luciferase Report Assay
Description:We found that MALAT1 was frequently upregulated in osteosarcoma samples and cell lines and a high level of MALAT1 predicted poor overall survival in osteosarcoma patients. Mechanistic investigations demonstrated that MALAT1, as a competing endogenous RNA (ceRNA), regulated osteosarcoma proliferation and metastasis through competitively binding to miR-34a/c-5p and miR-449a/b.
Causality:Yes
Causal Description:Knockdown of MALAT1 inhibited proliferation, migration, and invasion of osteosarcoma cells.
Clinical-realted Application:We found that MALAT1 was frequently upregulated in osteosarcoma samples and cell lines and a high level of MALAT1 predicted poor overall survival in osteosarcoma patients.

[4] PubMed ID:34692524
Disease Name:Osteosarcoma
Sample:OS cell
Dysfunction Pattern:Interaction(miR-150-5p/VEGFA signaling )
Validated Method:qRT-PCR//ELISA//Western Blot
Description:MALAT1 expression in OS cells was significantly higher than in normal osteoblasts. Mechanistically, silencing MALAT1 downregulated vascular endothelial growth factor A (VEGFA) expression and upregulated miR-150-5p expression in OS cells, and MALAT1-mediated angiogenic induction by VEGFA in OS microenvironment. Moreover, MALAT1 directly targeted miR-150-5p and miR-150-5p directly target VEGFA in OS. Overexpression of miR-150-5p downregulates VEGFA expression in OS.
Causality:Yes
Causal Description:The functional analysis indicated that MALAT1 appears to enhance OS-induced angiogenesis, in vitro and in vivo analyses, endothelial cell proliferation and migration, chick embryo angiogenesis assay, and zebrafish xenograft model.
Clinical-realted Application:

[5] PubMed ID:33358903
Disease Name:Osteosarcoma
Sample:OS tissues and cells
Dysfunction Pattern:Interaction(miR-485-3p/AKT3/mTOR signalling)
Validated Method:qRT-PCR//Western Blot
Description:miR-485-3p was decreased while c-MET, AKT3, and MALAT1 were increased in human OS tissues and cells. In addition, MALAT1 interacted with miR-485-3p and disinhibited c-MET and AKT3/mTOR signalling.
Causality:Yes
Causal Description:Knockdown MALAT1 or overexpression of miR-485-3p restrained OS tumour growth and lung metastasis in vivo.
Clinical-realted Application:

[6] PubMed ID:34373692
Disease Name:Osteosarcoma
Sample:OS cell lines and tissue specimens
Dysfunction Pattern:Interaction(miR-124-3p/SphK1 signaling pathway )
Validated Method:CCK8//qRT-PCR
Description: MALAT1 was overexpressed in OS cell lines and tissue specimens, and knockdown of MALAT1 significantly inhibited cell proliferation and migration and increased cell apoptosis and the percentage of G0/G1 phase. Furthermore, MALAT1 could directly bind to miR-124-3p and inhibit miR-124-3p expression. Moreover, MALAT1 overexpression significantly relieved the inhibition on OS cell proliferation mediated by miR-124-3p overexpression, which involved the derepression of sphingosine kinase 1 (SphK1).
Causality:Yes
Causal Description: MALAT1 was overexpressed in OS cell lines and tissue specimens, and knockdown of MALAT1 significantly inhibited cell proliferation and migration and increased cell apoptosis and the percentage of G0/G1 phase.
Clinical-realted Application:

[7] PubMed ID:36277152
Disease Name:Osteosarcoma
Sample:OS tissues and cell lines
Dysfunction Pattern:Interaction(miR-590-3p)
Validated Method:RNA Pull-Down//Western Blot//CCK8//qRT-PCR//RIP//Luciferase Report Assay//Cell Apoptosis Assay//Transwell Assay
Description: The results indicated that MALAT1 was highly expressed in OS tissues and cell lines. In addition, MALAT1 knockdown upregulated the expression of miR-590-3p in OS cells. In conclusion, MALAT1 was demonstrated to suppress cell apoptosis and induce cell proliferation, migration, invasion and EMT by inhibiting miR-590-3p in OS, which indicated that MALAT1 has potential value in the diagnosis and treatment of OS.
Causality:Yes
Causal Description:MALAT1 knockdown promoted apoptosis and suppressed proliferation, migration, invasion and epithelial- mesenchymal transition (EMT) of OS cells. Overexpression of miR-590-3p increased cell apoptosis and hampered cell proliferation, migration, invasion and EMT in OS cells.
Clinical-realted Application:

[8] PubMed ID:32728178
Disease Name:Osteosarcoma
Sample:osteosarcoma tissues
Dysfunction Pattern:regulation[miR-202 ]
Validated Method:qRT-PCR
Description:Comparison of different lncRNAs in tumor samples from osteosarcoma with and without lung metastasis led to identification of MALAT1 as the most differentially upregulated lncRNA in the osteosarcoma patients with lung metastasis.In conclusion, MALAT1-miR-202 represents a potential lncRNA-miRNA signature that affects lung metastasis of osteosarcomas and could potentially be targeted for therapy.
Causality:No
Causal Description:
Clinical-realted Application: