Entry Detail


General Information

Database ID: LDA0001793
Species: Homo sapiens
Confidence Score: 0.999893
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Yes

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:LINC00638
Full Name:long intergenic non-protein coding RNA 638
Category:LncRNA
Species:Homo sapiens
Synonyms:-
Chromosome:14
Strand:+
Coordinate:
Start Site(bp):104821201End Site(bp):104823718
External Links:
Ensembl ID:ENSG00000258701
Ensembl Transcript ID:N/A
Entrez Gene:196872.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:4   
More Information
Causal Disease Number:2
Network:
Top Causal Diseases:
Arthritis, Rheumatoid  (Score: 0.999893)
Arthritis, Rheumatoid  (Score: 0.999893)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:7148D001172
Disease Name:rheumatoid arthritisArthritis, Rheumatoid
Category:Disease OntologyMeSH
Type:Musculoskeletal Diseases
Define:An arthritis that is an autoimmune disease which attacks healthy cells and tissue located_in joint.A chronic systemic disease, primarily of the joints, marked by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. Etiology is unknown, but autoimmune mechanisms have been implicated.
Alias:Arthritis or polyarthritis, rheumatic//atrophic ArthritisArthritis, Rheumatoid//Rheumatoid Arthritis

 

Disease Association Statistics

Total Associated ncRNA Number:134   
More Information
Causal ncRNA Number:64
Network:
Top Causal ncRNAs:
GAS5  (Score: 1)
GAS5  (Score: 1)
NEAT1  (Score: 1)
NEAT1  (Score: 1)
LINC00638  (Score: 0.999893)
THRIL  (Score: 0.999893)
THRIL  (Score: 0.999893)
LINC00638  (Score: 0.999893)
ZFAS1  (Score: 0.985791)
MEG3  (Score: 0.985791)
More Information

 

Evidence Support

Strong Evidence:Western Blot//Transfection//CCK8//qRT-PCR//Flow Cytometry//ELISA//Transwell Assay//IF
Weak Evidence:

 

Reference

[1] PubMed ID:34308844
Disease Name:Arthritis, Rheumatoid
Sample:PBMCs
Dysfunction Pattern:Expression(lower expressed)
Validated Method:CCK8//Transfection
Description:Compared with the healthy control subjects, RA patients had significantly increased ESR, CRP, RF, anti-CCP, IgA, and C4 levels (P < 0.05) and significantly decreased Linc00638 expression in the PBMCs (P < 0.01).
Causality:Yes
Causal Description:In RA-FLS, overexpression of Linc00638 significantly inhibited while Linc00638 interference obviously enhanced the cell viability. Over-expression of Linc00638 also significantly increased the levels of IL-4 and SOD (P < 0.05) and decreased the expressions of IL-6 and ROS (P < 0.05), while interference of Linc00638 produced the opposite effects in the cells (P < 0.05).
Clinical-realted Application: The area under the receiver-operating characteristic (ROC) curve of Linc00638 was 91.86% with the best cut-off value of 0.74 for diagnosis of RA. Spearman correlation analysis showed that Linc00638 expression level was negatively correlated with age, course of disease, DAS28, ESR, CRP, RF and anti-CCP, and positively correlated with IL-4 and SOD levels (P < 0.05).

[2] PubMed ID:35545408
Disease Name:Arthritis, Rheumatoid
Sample:48 RA patients
Dysfunction Pattern:Expression(lower expressed)
Validated Method:qRT-PCR//ELISA//IF
Description:Compared with the control group, the expression of LINC00638 in the RA group was lower (P<0.01).
Causality:Yes
Causal Description: Compared with siRNA-control group, LINC00638, IL-10, SOD2 and HO-1 in the siRNA-LINC00638 group were significantly decreased (all P<0.01), and TNF-α was significantly increased (P<0.01).
Clinical-realted Application:

[3] PubMed ID:35759235
Disease Name:Arthritis, Rheumatoid
Sample:PBMCs, RA-FLS
Dysfunction Pattern:Regulation(Nrf2/HO-1 pathway)
Validated Method:Western Blot//CCK8//qRT-PCR//Flow Cytometry//IF//ELISA//Transwell Assay
Description:LINC00638 expression was found to be significantly decreased in PBMCs of RA patients, and it was negatively correlated with erythrocyte sedimentation rate, interleukin (IL)-17, reactive oxygen species (ROS), and disease activity scores for 28 joints (DAS28). Overexpression of LINC00638 activated the Nrf2/HO-1 pathway, markedly decreased the expressions of IL-6, IL-17, IL-23, ROS, as well as malondialdehyde, increased the total antioxidant capacity, and attenuated the proliferation and migration of RA-FLS, while silencing of LINC00638 reversed these manifestations.
Causality:Yes
Causal Description:Overexpression of LINC00638 activated the Nrf2/HO-1 pathway, markedly decreased the expressions of IL-6, IL-17, IL-23, ROS, as well as malondialdehyde, increased the total antioxidant capacity, and attenuated the proliferation and migration of RA-FLS, while silencing of LINC00638 reversed these manifestations.
Clinical-realted Application: