Entry Detail


General Information

Database ID: LDA0003795
Species: Homo sapiens
Confidence Score: 0.731059
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Unknown

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:CCAT1
Full Name:colon cancer associated transcript 1
Category:LncRNA
Species:Homo sapiens
Synonyms:CARLO5|CARLo-5|onco-lncRNA-40
Chromosome:8
Strand:-
Coordinate:
Start Site(bp):127207382End Site(bp):127219268
External Links:
Ensembl ID:N/A
Ensembl Transcript ID:N/A
Entrez Gene:100507056.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:46   
More Information
Causal Disease Number:30
Network:
Top Causal Diseases:
Colorectal Neoplasms  (Score: 1)
Colorectal Neoplasms  (Score: 1)
Carcinoma, Non-Small-Cell Lung  (Score: 1)
Carcinoma, Non-Small-Cell Lung  (Score: 1)
Squamous Cell Carcinoma of Head and Neck  (Score: 0.999893)
Stomach Neoplasms  (Score: 0.999893)
Squamous Cell Carcinoma of Head and Neck  (Score: 0.999893)
Adenocarcinoma of Lung  (Score: 0.999893)
Adenocarcinoma of Lung  (Score: 0.999893)
Stomach Neoplasms  (Score: 0.999893)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:768D012175
Disease Name:retinoblastomaRetinoblastoma
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A retinal cell cancer and malignant neoplasm of retina and neuroblastoma and neuroendocrine tumors that derives_from the tissues of the retina.A malignant tumor arising from the nuclear layer of the retina that is the most common primary tumor of the eye in children. The tumor tends to occur in early childhood or infancy and may be present at birth. The majority are sporadic, but the condition may be transmitted as an autosomal dominant trait. Histologic features include dense cellularity, small round polygonal cells, and areas of calcification and necrosis. An abnormal pupil reflex (leukokoria); NYSTAGMUS, PATHOLOGIC; STRABISMUS; and visual loss represent common clinical characteristics of this condition. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2104)
Alias:RB//RB - Retinoblastoma//neuroblastoma of RetinaRetinoblastoma//Retinoblastomas//Neuroblastoma, Retinal//Neuroblastomas, Retinal//Retinal Neuroblastoma//Retinal Neuroblastomas//Glioma, Retinal//Gliomas, Retinal//Retinal Glioma//Retinal Gliomas//Eye Cancer, Retinoblastoma//Cancer, Retinoblastoma Eye//Cancers, Retinoblastoma Eye//Eye Cancers, Retinoblastoma//Retinoblastoma Eye Cancer//Retinoblastoma Eye Cancers//Glioblastoma, Retinal//Glioblastomas, Retinal//Retinal Glioblastoma//Retinal Glioblastomas//Sporadic Retinoblastoma//Retinoblastoma, Sporadic//Retinoblastomas, Sporadic//Sporadic Retinoblastomas//Familial Retinoblastoma//Familial Retinoblastomas//Retinoblastoma, Familial//Retinoblastomas, Familial//Hereditary Retinoblastoma//Hereditary Retinoblastomas//Retinoblastoma, Hereditary//Retinoblastomas, Hereditary

 

Disease Association Statistics

Total Associated ncRNA Number:144   
More Information
Causal ncRNA Number:96
Network:
Top Causal ncRNAs:
MALAT1  (Score: 1)
XIST  (Score: 1)
hsa_circ_0000527  (Score: 1)
hsa_circ_0000527  (Score: 1)
NEAT1  (Score: 1)
XIST  (Score: 1)
MALAT1  (Score: 1)
NEAT1  (Score: 1)
hsa_circ_0000034  (Score: 0.999893)
FEZF1-AS1  (Score: 0.999893)
More Information

 

Evidence Support

Strong Evidence:Western Blot//Transfection//qPCR//Luciferase Report Assay//migration assay//cell invasion assay
Weak Evidence:

 

Reference

[1] PubMed ID:34265414
Disease Name:Retinoblastoma
Sample:RB cell lines
Dysfunction Pattern:Interaction(miR-218-5p/MTF2 axis)
Validated Method:Western Blot//Transfection//qPCR//migration assay//Luciferase Report Assay//cell invasion assay
Description:Previously, we have demonstrated that lncRNA colon cancer-associated transcript 1 (CCAT1) in two RB cell lines SO-RB50 and Y79 was obviously overexpressed, and notably, lncRNA CCAT1 attenuated miR-218-5p expressionand induced proliferation, cell migration and invasion. Functional analysis and rescue analysis showed that lncRNA CCAT1 via competitive binding to miR-218-5p to modulate MTF2 expression thus accelerate EMT, cell migration and invasion of RB.
Causality:Yes
Causal Description:Previously, we have demonstrated that lncRNA colon cancer-associated transcript 1 (CCAT1) in two RB cell lines SO-RB50 and Y79 was obviously overexpressed, and notably, lncRNA CCAT1 attenuated miR-218-5p expressionand induced proliferation, cell migration and invasion.
Clinical-realted Application: