Entry Detail


General Information

Database ID: LDA0004215
Species: Homo sapiens
Confidence Score: 0.999893
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Unknown

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:AFAP1-AS1
Full Name:AFAP1 antisense RNA 1
Category:LncRNA
Species:Homo sapiens
Synonyms:AFAP1-AS|AFAP1AS
Chromosome:4
Strand:+
Coordinate:
Start Site(bp):7754090End Site(bp):7778928
External Links:
Ensembl ID:ENSG00000272620
Ensembl Transcript ID:N/A
Entrez Gene:84740.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:60   
More Information
Causal Disease Number:58
Network:
Top Causal Diseases:
Carcinoma, Non-Small-Cell Lung  (Score: 1)
Carcinoma, Non-Small-Cell Lung  (Score: 1)
Breast Neoplasms  (Score: 1)
Stomach Neoplasms  (Score: 1)
Stomach Neoplasms  (Score: 1)
Breast Neoplasms  (Score: 1)
Prostatic Neoplasms  (Score: 0.999893)
Endometriosis  (Score: 0.999893)
Prostatic Neoplasms  (Score: 0.999893)
Endometriosis  (Score: 0.999893)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:289D004715
Disease Name:endometriosisEndometriosis
Category:Disease OntologyMeSH
Type:Urogenital Diseases
Define:A female reproductive system disease characterized by the growth of endometrial tissue outside the uterine body.A condition in which functional endometrial tissue is present outside the UTERUS. It is often confined to the PELVIS involving the OVARY, the ligaments, cul-de-sac, and the uterovesical peritoneum.
Alias:Endometriosis//Endometrioses//Endometrioma//Endometriomas

 

Disease Association Statistics

Total Associated ncRNA Number:46   
More Information
Causal ncRNA Number:42
Network:
Top Causal ncRNAs:
MALAT1  (Score: 0.999893)
AFAP1-AS1  (Score: 0.999893)
MALAT1  (Score: 0.999893)
AFAP1-AS1  (Score: 0.999893)
HOTAIR  (Score: 0.985791)
HOTAIR  (Score: 0.985791)
circATRNL1  (Score: 0.985791)
circATRNL1  (Score: 0.985791)
DHRS4  (Score: 0.731059)
CCDC144NL-AS1  (Score: 0.731059)
More Information

 

Evidence Support

Strong Evidence:In Vivo Experiment//RNA Pull-Down//Western Blot//Wound Healing Assay//Transfection//Flow Cytometry//qRT-PCR//CCK8//RIP//MTT//Luciferase Report Assay//IF//ELISA//IHC//EdU Staining//Transwell Assay
Weak Evidence:

 

Reference

[1] PubMed ID:30506548
Disease Name:Endometriosis
Sample:ectopic endometrial tissues
Dysfunction Pattern:Interaction[ZEB1]
Validated Method:Western Blot//Wound Healing Assay//qRT-PCR//MTT//Luciferase Report Assay//ELISA//IHC//EdU Staining//Transwell Assay
Description:AFAP1-AS1 levels were much higher in ectopic endometrial tissues than that in eutopic tissues.The knockdown of AFAP1-AS1 significantly inhibited expression from promoter site pGL3-P886 of the EMT-related transcription factor ZEB1. The size of subcutaneous tumours in nude mice was significantly reduced after down-regulation of AFAP1-AS1 expression.
Causality:Yes
Causal Description:After knockdown of AFAP1-AS1, the morphology of endometrial epithelial cells varied from spindle fiber shaped to polygon epithelioid and proliferation, migration, and invasion were each inhibited.
Clinical-realted Application:

[2] PubMed ID:33949053
Disease Name:Endometriosis
Sample:ESCs
Dysfunction Pattern:Interaction(miR-424-5p/ STAT3/TGF-β/Smad signaling pathway)
Validated Method:Western Blot//Transfection//Flow Cytometry//qRT-PCR//MTT//Luciferase Report Assay//Transwell Assay
Description:AFAP1-AS1 knockdown or miR-424-5p overexpression inhibited proliferation and migration, and promoted apoptosis in ESCs. Moreover, AFAP1-AS1 activated the STAT3/transforming growth factor-β1 (TGF-β1)/Smad2 axis via directly targeting miR-424-5p.
Causality:Yes
Causal Description:In addition, knockdown of AFAP1-AS1 repressed the expression of ki-67 and Bcl-2, and promoted the levels of cleaved caspase-3 and Bax. Furthermore, knockdown of AFAP1-AS1 inhibited the conversion of E-cadherin to N-cadherin and the expression of Snail.
Clinical-realted Application:

[3] PubMed ID:35513844
Disease Name:Endometriosis
Sample:Exo of ESCs
Dysfunction Pattern:Interaction(miR-15a-5p/BCL9)
Validated Method:In Vivo Experiment//RNA Pull-Down//IHC//Western Blot//Transfection//CCK8//qRT-PCR//RIP//Luciferase Report Assay//Transwell Assay//Bioinformatics Analysis//IF
Description:The Exo was successfully isolated from ESCs and we observed high expression of AFAP1-AS1 and BCL9 but low expression of miR-15a-5p in EMS. AFAP1-AS1 bound to BCL9, which was targeted by miR-15a-5p in EMS. In vivo experiments in nude mice revealed that inhibition of Exosomal AFAP1-AS1 suppressed migration and invasion of EcESCs through miR-15a-5p/BCL9.
Causality:Yes
Causal Description:Moreover, Exo derived from EcESCs could deliver AFAP1-AS1 to EcESCs and thus promoting proliferation, migration, and invasion of ESCs.
Clinical-realted Application: