Entry Detail


General Information

Database ID: LDA0004845
Species: Homo sapiens
Confidence Score: 0.731059
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Unknown

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:SND1-IT1
Full Name:SND1 intronic transcript 1
Category:LncRNA
Species:Homo sapiens
Synonyms:C7orf54|NAG8|NSG-X
Chromosome:7
Strand:+
Coordinate:
Start Site(bp):127997509End Site(bp):128000077
External Links:
Ensembl ID:ENSG00000279078
Ensembl Transcript ID:N/A
Entrez Gene:27099.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:6   
More Information
Causal Disease Number:4
Network:
Top Causal Diseases:
Stomach Neoplasms  (Score: 0.985791)
Stomach Neoplasms  (Score: 0.985791)
Retinoblastoma  (Score: 0.731059)
Retinoblastoma  (Score: 0.731059)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:768D012175
Disease Name:retinoblastomaRetinoblastoma
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A retinal cell cancer and malignant neoplasm of retina and neuroblastoma and neuroendocrine tumors that derives_from the tissues of the retina.A malignant tumor arising from the nuclear layer of the retina that is the most common primary tumor of the eye in children. The tumor tends to occur in early childhood or infancy and may be present at birth. The majority are sporadic, but the condition may be transmitted as an autosomal dominant trait. Histologic features include dense cellularity, small round polygonal cells, and areas of calcification and necrosis. An abnormal pupil reflex (leukokoria); NYSTAGMUS, PATHOLOGIC; STRABISMUS; and visual loss represent common clinical characteristics of this condition. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2104)
Alias:RB//RB - Retinoblastoma//neuroblastoma of RetinaRetinoblastoma//Retinoblastomas//Neuroblastoma, Retinal//Neuroblastomas, Retinal//Retinal Neuroblastoma//Retinal Neuroblastomas//Glioma, Retinal//Gliomas, Retinal//Retinal Glioma//Retinal Gliomas//Eye Cancer, Retinoblastoma//Cancer, Retinoblastoma Eye//Cancers, Retinoblastoma Eye//Eye Cancers, Retinoblastoma//Retinoblastoma Eye Cancer//Retinoblastoma Eye Cancers//Glioblastoma, Retinal//Glioblastomas, Retinal//Retinal Glioblastoma//Retinal Glioblastomas//Sporadic Retinoblastoma//Retinoblastoma, Sporadic//Retinoblastomas, Sporadic//Sporadic Retinoblastomas//Familial Retinoblastoma//Familial Retinoblastomas//Retinoblastoma, Familial//Retinoblastomas, Familial//Hereditary Retinoblastoma//Hereditary Retinoblastomas//Retinoblastoma, Hereditary//Retinoblastomas, Hereditary

 

Disease Association Statistics

Total Associated ncRNA Number:144   
More Information
Causal ncRNA Number:96
Network:
Top Causal ncRNAs:
MALAT1  (Score: 1)
XIST  (Score: 1)
hsa_circ_0000527  (Score: 1)
hsa_circ_0000527  (Score: 1)
NEAT1  (Score: 1)
XIST  (Score: 1)
MALAT1  (Score: 1)
NEAT1  (Score: 1)
hsa_circ_0000034  (Score: 0.999893)
FEZF1-AS1  (Score: 0.999893)
More Information

 

Evidence Support

Strong Evidence:RNA Pull-Down//Western Blot//Wound Healing Assay//CCK8//qRT-PCR//Luciferase Report Assay//Colony Formation Assay//Transwell Assay
Weak Evidence:

 

Reference

[1] PubMed ID:34969359
Disease Name:Retinoblastoma
Sample:RB specimens and cells
Dysfunction Pattern:Interaction(miR-132-3p/SMAD2 axis)
Validated Method:RNA Pull-Down//Western Blot//Wound Healing Assay//CCK8//qRT-PCR//Luciferase Report Assay//Colony Formation Assay//Transwell Assay
Description:We observed that SND1-IT1 was highly expressed in both RB specimens and cells, and associated with poorer prognosis of RB patients.MiR-132-3p was predicted to interact with SND1-IT1. RT-qPCR and dual-luciferase reporter assays verified the regulation of miR-132-3p by SND1-IT1 in RB cells. In addition, SND1-IT1 enhanced the expression of SMAD2 by sponging miR-132-3p.
Causality:Yes
Causal Description:Functional investigation revealed that downregulation of SND1-IT1 suppressed RB cell proliferation, migration and invasion in vitro and restrained RB tumorigenesis in vivo.
Clinical-realted Application: