Entry Detail


General Information

Database ID: LDA0005190
Species: Homo sapiens
Confidence Score: 1
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Yes

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:SNHG12
Full Name:small nucleolar RNA host gene 12
Category:LncRNA
Species:Homo sapiens
Synonyms:ASLNC04080|C1orf79|LINC00100|NCRNA00100|PNAS-123
Chromosome:1
Strand:-
Coordinate:
Start Site(bp):28578538End Site(bp):28582983
External Links:
Ensembl ID:ENSG00000197989
Ensembl Transcript ID:N/A
Entrez Gene:85028.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:50   
More Information
Causal Disease Number:46
Network:
Top Causal Diseases:
Carcinoma, Renal Cell  (Score: 1)
Stomach Neoplasms  (Score: 1)
Carcinoma, Renal Cell  (Score: 1)
Stomach Neoplasms  (Score: 1)
Prostatic Neoplasms  (Score: 0.999893)
Prostatic Neoplasms  (Score: 0.999893)
Esophageal Squamous Cell Carcinoma  (Score: 0.985791)
Glioma  (Score: 0.985791)
Thyroid Cancer, Papillary  (Score: 0.985791)
Breast Neoplasms  (Score: 0.985791)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:4467D002292
Disease Name:clear cell renal cell carcinomaCarcinoma, Renal Cell
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A renal cell carcinoma that has_material_basis_in cells that appear very pale or clear when examined under microscope.A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.
Alias:Clear cell carcinoma of kidney//clear cell kidney carcinoma//conventional (Clear cell) renal cell carcinoma//conventional renal cell carcinoma//renal clear cell carcinomaCarcinoma, Renal Cell//Carcinomas, Renal Cell//Renal Cell Carcinomas//Nephroid Carcinoma//Carcinoma, Nephroid//Nephroid Carcinomas//Adenocarcinoma Of Kidney//Adenocarcinoma Of Kidneys//Kidney, Adenocarcinoma Of//Renal Cell Carcinoma//Renal Cell Cancer//Cancer, Renal Cell//Renal Cell Cancers//Adenocarcinoma, Renal//Renal Adenocarcinoma//Renal Adenocarcinomas//Renal Carcinoma//Carcinoma, Renal//Renal Carcinomas//Adenocarcinoma, Renal Cell//Adenocarcinomas, Renal Cell//Renal Cell Adenocarcinoma//Renal Cell Adenocarcinomas//Chromophobe Renal Cell Carcinoma//Sarcomatoid Renal Cell Carcinoma//Papillary Renal Cell Carcinoma//Renal Cell Carcinoma, Papillary//Chromophil Renal Cell Carcinoma//Clear Cell Renal Cell Carcinoma//Grawitz Tumor//Tumor, Grawitz//Clear Cell Renal Carcinoma//Carcinoma, Hypernephroid//Hypernephroid Carcinoma//Hypernephroid Carcinomas//Hypernephroma//Hypernephromas//Collecting Duct Carcinoma (Kidney)//Carcinoma, Collecting Duct (Kidney)//Carcinomas, Collecting Duct (Kidney)//Collecting Duct Carcinomas (Kidney)//Collecting Duct Carcinoma of the Kidney//Renal Collecting Duct Carcinoma//Collecting Duct Carcinoma//Carcinoma, Collecting Duct//Carcinomas, Collecting Duct//Collecting Duct Carcinomas

 

Disease Association Statistics

Total Associated ncRNA Number:458   
More Information
Causal ncRNA Number:316
Network:
Top Causal ncRNAs:
SNHG12  (Score: 1)
MALAT1  (Score: 1)
MALAT1  (Score: 1)
PVT1  (Score: 1)
PVT1  (Score: 1)
SNHG12  (Score: 1)
SNHG1  (Score: 0.999893)
SNHG1  (Score: 0.999893)
HOTAIR  (Score: 0.985791)
MIR4435-2HG  (Score: 0.985791)
More Information

 

Evidence Support

Strong Evidence:In Vivo Experiment//Western Blot//Transfection//Genotyping//CCK8//qRT-PCR//RIP//Luciferase Report Assay//IHC//EdU Staining//Transwell Assay
Weak Evidence:

 

Reference

[1] PubMed ID:33787057
Disease Name:Carcinoma, Renal Cell
Sample:ccRCC tissues and cells
Dysfunction Pattern:Interaction( miR-30a-3p)
Validated Method:In Vivo Experiment//Western Blot//Transfection//qRT-PCR//RIP//Luciferase Report Assay//IHC//EdU Staining//Transwell Assay
Description: In the present study, we discovered that SNHG12 is up-regulated in ccRCC and that overexpression of SNHG12 predicted poor clinical outcome of ccRCC patients. Furthermore, we discovered that miR-30a-3p, a putative ccRCC inhibitor, was competitively sponged by SNHG12. Via the crosstalk network, SNHG12 was capable of up-regulating multiple target genes of miR-30a-3p, namely, RUNX2, WNT2 and IGF-1R, which have been identified to facilitate tumorigenesis of ccRCC.
Causality:Yes
Causal Description:SNHG12 knockdown notably inhibited proliferation and migration of RCC cells.
Clinical-realted Application: In the present study, we discovered that SNHG12 is up-regulated in ccRCC and that overexpression of SNHG12 predicted poor clinical outcome of ccRCC patients.

[2] PubMed ID:31824846
Disease Name:Carcinoma, Renal Cell
Sample:ccRCC tissues and cell lines
Dysfunction Pattern:Interaction[Sponging miR-129-5p]
Validated Method:qRT-PCR//Luciferase Report Assay//RIP
Description:MRNA microarray and quantitative real-time PCR revealed that SNHG12 was overexpressed in the ccRCC tissues and cell lines. Mechanistically, dual luciferase assay and RNA immunoprecipitation (RIP) assay showed that miR-129-5p could bind to SNHG12 directly. There was a negative relationship between SNHG12 and miR-129-5p. What's more, we used bioinformatics-based prediction software to predict the target genes of miR-129-5p. Through data analysis and experimental verification, we found MDM4, a regulatory factor in p53 pathway, was involved in this ceRNA network. Our findings demonstrated that SNHG12 served as a sponge for miR-129-5p to regulate the expression of MDM4 and p53 pathway in the development of ccRCC.
Causality:Yes
Causal Description:Functional inhibition of SNHG12 suppressed the viability and mobility of ccRCC cells.
Clinical-realted Application:

[3] PubMed ID:31114448
Disease Name:Carcinoma, Renal Cell
Sample:renal tissue,cell lines
Dysfunction Pattern:Interaction[HIF1α]
Validated Method:Western Blot//CCK8//qRT-PCR//Luciferase Report Assay//Transwell Assay
Description:SNHG12 was aberrantly up-regulated in renal carcinoma both in vivo and in vitro.Mechanistically, SNHG12 modulated HIF1α expression via competing with miR-199a-5p, which consequently contributed to its oncogenic potential. MiR-199a-5p inhibition severely compromised SNHG12 silencing-elicited tumor repressive effects.
Causality:Yes
Causal Description: Deficiency of SNHG12 significantly suppressed cell viability, anchorage-independent growth and induced apoptosis. In addition, SNHG12 silencing inhibited migrative and invasive in vitro and xenograft tumor growth in vivo.
Clinical-realted Application:

[4] PubMed ID:32901847
Disease Name:Carcinoma, Renal Cell
Sample:RCC tumor tissues
Dysfunction Pattern:regulation[SNHG12/miR-200c-5p/COL11A1 axis ]
Validated Method:qRT-PCR//Western Blot
Description:Reverse transcription?quantitative PCR, demonstrated that SNHG12 expression levels were upregulated in RCC tumor tissues, but not in normal kidney tissues. In conclusion, the results of the present study suggested that the SNHG12/miR‑200c‑5p/COL11A1 axis may be crucial for RCC progression, which provided an insight into potential therapeutic strategies for RCC treatment.
Causality:Yes
Causal Description: SNHG12 knockdown markedly inhibited cell viability and invasion, while increasing apoptosis in both A498 and 786O cell lines.
Clinical-realted Application:

[5] PubMed ID:35597996
Disease Name:Carcinoma, Renal Cell
Sample:RCC tissues and cells
Dysfunction Pattern:Regulation(CEP55 )
Validated Method:qRT-PCR//Luciferase Report Assay//Genotyping
Description:SNHG12 was highly expressed in RCC tissues and cells, and it was related to the poor prognosis of RCC patients. KMT2B up-regulated SNHG12 expression through modifying H3K4me3 in its promoter region. In addition, SNHG12 promoted CEP55 expression by recruiting the transcription factor E2F1. Knockdown of SNHG12 blocked E2F1 recruitment and down-regulated the expression of CEP55, thereby inhibiting tumor formation and angiogenesis in nude mice.
Causality:Yes
Causal Description: SNHG12 knockdown significantly inhibited RCC cell proliferation, migration, and invasion and HUVEC angiogenesis.
Clinical-realted Application: