Entry Detail


General Information

Database ID: LDA0005997
Species: Homo sapiens
Confidence Score: 1
Contents: >> ncRNA Information
>> ncRNA Association Statistics
>> Disease Information
>> Disease Association Statistics
>> Evidence Support
>> Reference
Causality: Yes
Clinical Significance: Yes

 


ncRNA Information

Reference Genome Note: GRCh38 for human lncRNAs; GRCm39 for mouse lncRNAs; mRatBN7.2 for rat lncRNAs; hg19 for human circRNAs; mm9 for mouse circRNAs.

ncRNA Symbol:TUG1
Full Name:taurine up-regulated 1
Category:LncRNA
Species:Homo sapiens
Synonyms:LINC00080|NCRNA00080|TI-227H
Chromosome:22
Strand:+
Coordinate:
Start Site(bp):30969265End Site(bp):30979395
External Links:
Ensembl ID:ENSG00000253352
Ensembl Transcript ID:N/A
Entrez Gene:55000.0
NONCODE ID:N/A
RefSeq Accession:N/A

 

ncRNA Association Statistics

Total Associated Disease Number:106   
More Information
Causal Disease Number:66
Network:
Top Causal Diseases:
Prostatic Neoplasms  (Score: 1)
Osteosarcoma  (Score: 1)
Prostatic Neoplasms  (Score: 1)
Osteosarcoma  (Score: 1)
Carcinoma, Hepatocellular  (Score: 1)
Colorectal Neoplasms  (Score: 1)
Colorectal Neoplasms  (Score: 1)
Carcinoma, Hepatocellular  (Score: 1)
Leukemia, Myeloid, Acute  (Score: 0.999998)
Leukemia, Myeloid, Acute  (Score: 0.999998)
More Information

 

 

Disease Information

 Disease OntologyMeSH
Disease ID:DOID:3347D012516
Disease Name:osteosarcomaOsteosarcoma
Category:Disease OntologyMeSH
Type:Neoplasms
Define:A bone sarcoma that is located_in bone that has_material_basis_in cells of mesenchymal origin.A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)
Alias:Osteogenic sarcoma//Skeletal sarcoma//bone tissue neoplasm//osteoid sarcomaOsteosarcoma//Osteosarcomas//Osteosarcoma Tumor//Osteosarcoma Tumors//Tumor, Osteosarcoma//Tumors, Osteosarcoma//Sarcoma, Osteogenic//Osteogenic Sarcomas//Sarcomas, Osteogenic//Osteogenic Sarcoma

 

Disease Association Statistics

Total Associated ncRNA Number:656   
More Information
Causal ncRNA Number:600
Network:
Top Causal ncRNAs:
NEAT1  (Score: 1)
PVT1  (Score: 1)
GAS5  (Score: 1)
SNHG16  (Score: 1)
LINC00662  (Score: 1)
MALAT1  (Score: 1)
MALAT1  (Score: 1)
LINC00662  (Score: 1)
ZFAS1  (Score: 1)
TUG1  (Score: 1)
More Information

 

Evidence Support

Strong Evidence:RNA Pull-Down//Western Blot//CCK8//qRT-PCR//RIP//MTT//Luciferase Report Assay//ELISA//Colony Formation Assay//Transwell Assay
Weak Evidence:

 

Reference

[1] PubMed ID:35012433
Disease Name:Osteosarcoma
Sample:OS tissues and cells
Dysfunction Pattern:Interaction(micro RNA-377-3p)
Validated Method:Western Blot//CCK8//qRT-PCR//Luciferase Report Assay//Colony Formation Assay//Transwell Assay
Description: The expressions of lncRNA TUG1 and Ezrin were upregulated in OS tissues and cells determined by quantitative reverse transcription-PCR (qRT-PCR) and Western blot (WB), respectively. Moreover, lncRNA TUG1 upregulated Ezrin expression through sponging miR-377-3p determined by dual-luciferase reporter gene assay and WB.
Causality:Yes
Causal Description: In addition, both lncRNA TUG1 and Ezrin promoted OS cell proliferation identified by Cell Counting Kit-8 (CCK-8) assay and clone formation assay, and enhanced OS cell invasion detected using Transwell assay for cell invasion.
Clinical-realted Application:

[2] PubMed ID:29436190
Disease Name:Osteosarcoma
Sample:OS tissues, OS cell lines, and primary OS cells
Dysfunction Pattern:Interaction(miR-132-3p/SOX4 axis)
Validated Method:qRT-PCR//Western Blot
Description: TUG1 was highly expressed in human OS tissues, OS cell lines, and primary OS cells. TUG1 facilitated proliferation and suppressed apoptosis by regulating the miR-132-3p/SOX4 axis in human OS cell lines and primary OS cells.
Causality:Yes
Causal Description:TUG1 knockdown hindered proliferation and induced apoptosis in human OS cell lines and primary OS cells.
Clinical-realted Application:

[3] PubMed ID:31799645
Disease Name:Osteosarcoma
Sample:OS tissues and cell lines
Dysfunction Pattern:Regulation[miR-140-5p/PFN2 axis]
Validated Method:Western Blot//qRT-PCR//MTT//Luciferase Report Assay//Transwell Assay
Description:TUG1 and PFN2 levels were evidently upregulated in OS tissues and cell lines.TUG1 modulated cell proliferation, migration, and invasion via miR-140-5p/PFN2 axis in OS progression, which might trigger the development of therapeutic strategies for the treatment of OS.
Causality:Yes
Causal Description:The knockdown of either TUG1 or PFN2 could restrain cell proliferation, migration, and invasion in OS cells.
Clinical-realted Application:

[4] PubMed ID:31555384
Disease Name:Osteosarcoma
Sample:osteosarcoma tissues,blood
Dysfunction Pattern:Interaction[RUNX2]
Validated Method:CCK8//qRT-PCR//Western Blot//Transwell Assay
Description:TUG1 expression was found to be significantly higher in osteosarcoma tissues compared with adjacent healthy tissues, and in the plasma of osteosarcoma patients compared with healthy controls. These results suggest that lncRNA TUG1 may promote the development of osteosarcoma by modulating RUNX2 and TUG1 expression, which can serve as prognostic and diagnostic markers for this malignancy.
Causality:Yes
Causal Description:TUG1 overexpression and knockdown respectively increased and reducedosteosarcoma cell viability, migration and invasion.
Clinical-realted Application:

[5] PubMed ID:29970697
Disease Name:Osteosarcoma
Sample:osteosarcoma tissues
Dysfunction Pattern:Expression[highly expressed]
Validated Method:qRT-PCR
Description:This study shows that the expression of TUG1 in osteosarcoma tissues was significantly higher than that in adjacent normal bone tissues.
Causality:No
Causal Description:
Clinical-realted Application:Upregulation of TUG1 was significantly correlated with the larger tumor size and advanced tumor-node-metastases stage of osteosarcoma patients. Kaplan-Meier curve showed a decreased overall survival time of osteosarcoma patients with high TUG1 expression.

[6] PubMed ID:30911001
Disease Name:Osteosarcoma
Sample:OS tissues
Dysfunction Pattern:Interaction[mediating HIF-1α via miR-143-5p]
Validated Method:RNA Pull-Down//Western Blot//CCK8//qRT-PCR//RIP//Luciferase Report Assay//ELISA//Transwell Assay
Description:TUG1 was significantly upregulated in OS tissues and associated with tumour size, distant metastasis, TNM stage, and overall and recurrence-free survival, which further indicated poor prognosis. Dysregulated TUG1 expression could act as an miRNA "sponge" to competitively protect the HIF-1α mRNA 3'UTR from miR-143-5p.
Causality:No
Causal Description:
Clinical-realted Application:TUG1 was significantly upregulated in OS tissues and associated with tumour size, distant metastasis, TNM stage, and overall and recurrence-free survival, which further indicated poor prognosis.